PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN11482.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 244aa    MW: 28444.3 Da    PI: 6.0472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN11482.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-1223803697
                EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                  le + g++W+v+   +k+ g+++++kGWkeFv+   L+ g  + Fk++g+s+    v ++
  KHN11482.1 23 TNLERLYGNEWKVNW--TKQNGEVWFEKGWKEFVEHYSLDHGHLIFFKYEGTSQI--DVLIL 80
                5788999********..********************************997665..56665 PP

2B343.75e-14155242199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ff+v++++ + + grl lp   ++ + ++  ++k l+  ++  rsW+vkl   +++    l++GW +F+++ +L+ gD++vF+l++r++  ++v+vf++
  KHN11482.1 155 FFTVFIKPVHVADGRLPLP--DLKGIIEN--KEKYLK-LQLGERSWNVKL--LNNR----LSAGWTSFASESELQPGDVCVFELINREDSVFKVHVFKR 242
                 6777777777777755555..44444333..333455.34677*******..9999....9************************99888899999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.378183IPR003340B3 DNA binding domain
SMARTSM010190.0311683IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-142189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-142283IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-92374IPR003340B3 DNA binding domain
CDDcd100178.30E-92581No hitNo description
Gene3DG3DSA:2.40.330.101.8E-14152243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-14153243IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-12154241No hitNo description
PROSITE profilePS5086311.152155243IPR003340B3 DNA binding domain
PfamPF023629.8E-11155242IPR003340B3 DNA binding domain
SMARTSM010192.7E-9155243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAAHRPGRDA TLPILFFKII LKTNLERLYG NEWKVNWTKQ NGEVWFEKGW KEFVEHYSLD  60
HGHLIFFKYE GTSQIDVLIL DQSALEIDYL CDTCDENETL DHTHEAPNTI FGEWPDQKAE  120
KMRGEEPIER TSSLNMPTQS RAKEVARNFI SYNPFFTVFI KPVHVADGRL PLPDLKGIIE  180
NKEKYLKLQL GERSWNVKLL NNRLSAGWTS FASESELQPG DVCVFELINR EDSVFKVHVF  240
KRHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1412524118141B3 domain-containing transcription factor VRN
4i1k_B2e-1412524118141B3 domain-containing transcription factor VRN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628021.11e-173PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0B2PVC00.0A0A0B2PVC0_GLYSO; B3 domain-containing protein
STRINGGLYMA20G24268.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-16B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]